IL_8BHF_127

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8BHF|1|A2|U|3909

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_127 not in the Motif Atlas

Homologous match to IL_5TBW_093

Geometric discrepancy: 0.0562

The information below is about IL_5TBW_093

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BHF|1|A2|G|3908
8BHF|1|A2|U|3909
8BHF|1|A2|U|3910
*
8BHF|1|A2|A|4374
8BHF|1|A2|C|4375

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain N1

60S ribosomal protein L27a

Chain l3

60S ribosomal protein L4