IL_8BHF_133

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_133 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.322

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8BHF|1|A2|U|3963
8BHF|1|A2|G|3964
8BHF|1|A2|G|3965
*
8BHF|1|A2|C|4045
8BHF|1|A2|C|4046
8BHF|1|A2|A|4047

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain l1

60S ribosomal protein L10a