IL_8BHF_136

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAGC*GGCUCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_136 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.2786

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8BHF|1|A2|G|4089
8BHF|1|A2|C|4090
8BHF|1|A2|G|4091
8BHF|1|A2|A|4092
8BHF|1|A2|G|4093
8BHF|1|A2|C|4094
*
8BHF|1|A2|G|4101
8BHF|1|A2|G|4102
8BHF|1|A2|C|4103
8BHF|1|A2|U|4104
8BHF|1|A2|C|4105
8BHF|1|A2|U|4106

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C3

40S ribosomal protein S3a

Chain T1

60S ribosomal protein L34

Chain p3

60S ribosomal protein L7a