IL_8BHF_147

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_147 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1005

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8BHF|1|A2|C|4398
8BHF|1|A2|C|4399
8BHF|1|A2|A|4400
8BHF|1|A2|A|4401
8BHF|1|A2|G|4402
*
8BHF|1|A2|C|4412
8BHF|1|A2|G|4413
8BHF|1|A2|A|4414
8BHF|1|A2|C|4415
8BHF|1|A2|G|4416

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Z1

Ubiquitin-60S ribosomal protein L40

Chain r3

Ribosomal protein L10