IL_8BHF_154

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8BHF|1|A2|A|4534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_154 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.15

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8BHF|1|A2|C|4523
8BHF|1|A2|G|4524
*
8BHF|1|A2|C|4533
8BHF|1|A2|A|4534
8BHF|1|A2|G|4535

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain 21

Transfer RNA; tRNA

Chain j3

60S ribosomal protein L8