IL_8BHF_156

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8BHF|1|A2|C|4706

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_156 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3648

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8BHF|1|A2|C|4568
8BHF|1|A2|C|4569
8BHF|1|A2|A|4570
8BHF|1|A2|U|4571
*
8BHF|1|A2|A|4703
8BHF|1|A2|G|4704
8BHF|1|A2|G|4705
8BHF|1|A2|C|4706
8BHF|1|A2|G|4707

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

60S ribosomal protein L13a

Chain k3

Ribosomal protein L3