IL_8BHF_157

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_157 not in the Motif Atlas

Homologous match to IL_8C3A_124

Geometric discrepancy: 0.1422

The information below is about IL_8C3A_124

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BHF|1|A2|A|4576
8BHF|1|A2|U|4577
8BHF|1|A2|C|4578
*
8BHF|1|A2|G|4604
8BHF|1|A2|U|4605
8BHF|1|A2|U|4606

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain I1

60S ribosomal protein L23

Chain k3

Ribosomal protein L3