IL_8BHF_161

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_161 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1173

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8BHF|1|A2|U|4624
8BHF|1|A2|G|4625
8BHF|1|A2|C|4626
*
8BHF|1|A2|G|4645
8BHF|1|A2|G|4646
8BHF|1|A2|G|4647

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain J1

TRASH domain-containing protein

Chain Q1

60S ribosomal protein L31