IL_8BHF_162

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

8BHF|1|A2|A|4642, 8BHF|1|A2|U|4643

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_162 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.1846

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8BHF|1|A2|U|4627
8BHF|1|A2|U|4628
*
8BHF|1|A2|A|4641
8BHF|1|A2|A|4642
8BHF|1|A2|U|4643
8BHF|1|A2|G|4644

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E1

Ribosomal protein L19

Chain Q1

60S ribosomal protein L31