IL_8BHF_166

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCGGAUAGC*GUGCGGAGAG

Length

21 nucleotides

Bulged bases

8BHF|1|A2|C|4743, 8BHF|1|A2|U|4744, 8BHF|1|A2|A|4750, 8BHF|1|A2|G|4852, 8BHF|1|A2|C|4853, 8BHF|1|A2|G|4855, 8BHF|1|A2|A|4858

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|4742
8BHF|1|A2|C|4743
8BHF|1|A2|U|4744
8BHF|1|A2|C|4745
8BHF|1|A2|G|4746
8BHF|1|A2|G|4747
8BHF|1|A2|A|4748
8BHF|1|A2|U|4749
8BHF|1|A2|A|4750
8BHF|1|A2|G|4751
8BHF|1|A2|C|4752
*
8BHF|1|A2|G|4850
8BHF|1|A2|U|4851
8BHF|1|A2|G|4852
8BHF|1|A2|C|4853
8BHF|1|A2|G|4854
8BHF|1|A2|G|4855
8BHF|1|A2|A|4856
8BHF|1|A2|G|4857
8BHF|1|A2|A|4858
8BHF|1|A2|G|4859

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

60S ribosomal protein L13a

Chain F1

60S ribosomal protein L18a

Chain n3

60S ribosomal protein L6

Chain q3

60S ribosomal protein L9

Chain u3

60S ribosomal protein L14