IL_8BHF_169

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAACG*CUCGCC

Length

13 nucleotides

Bulged bases

8BHF|1|A2|C|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|G|4872
8BHF|1|A2|G|4873
8BHF|1|A2|A|4874
8BHF|1|A2|A|4875
8BHF|1|A2|A|4876
8BHF|1|A2|C|4877
8BHF|1|A2|G|4878
*
8BHF|1|A2|C|4906
8BHF|1|A2|U|4907
8BHF|1|A2|C|4908
8BHF|1|A2|G|4909
8BHF|1|A2|C|4910
8BHF|1|A2|C|4911

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

60S ribosomal protein L13a

Chain n3

60S ribosomal protein L6

Chain u3

60S ribosomal protein L14