IL_8BHF_175

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

8BHF|1|A2|G|5023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|U|4985
8BHF|1|A2|C|4986
8BHF|1|A2|G|4987
8BHF|1|A2|U|4988
8BHF|1|A2|A|4989
8BHF|1|A2|C|4990
8BHF|1|A2|G|4991
*
8BHF|1|A2|U|5021
8BHF|1|A2|U|5022
8BHF|1|A2|G|5023
8BHF|1|A2|A|5024
8BHF|1|A2|A|5025
8BHF|1|A2|A|5026

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain J1

TRASH domain-containing protein

Chain Q1

60S ribosomal protein L31

Chain k3

Ribosomal protein L3