IL_8BHF_180

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

8BHF|1|A3|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_180 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3312

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8BHF|1|A3|C|37
8BHF|1|A3|A|38
8BHF|1|A3|A|39
8BHF|1|A3|A|40
*
8BHF|1|A3|U|514
8BHF|1|A3|G|515
8BHF|1|A3|A|516
8BHF|1|A3|C|517
8BHF|1|A3|G|518

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain F3

40S ribosomal protein S4

Chain K3

Ribosomal protein S9 (Predicted)

Chain Z3

40S ribosomal protein S24