IL_8BHF_188

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_188 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1912

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

8BHF|1|A3|U|116
8BHF|1|A3|C|117
8BHF|1|A3|C|118
8BHF|1|A3|U|119
8BHF|1|A3|U|120
8BHF|1|A3|U|121
*
8BHF|1|A3|A|343
8BHF|1|A3|U|344
8BHF|1|A3|U|345
8BHF|1|A3|C|346
8BHF|1|A3|G|347

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain F3

40S ribosomal protein S4

Chain J3

40S ribosomal protein S8