IL_8BHF_192

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_192 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1975

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8BHF|1|A3|C|188
8BHF|1|A3|U|189
8BHF|1|A3|G|190
8BHF|1|A3|A|191
8BHF|1|A3|C|192
*
8BHF|1|A3|G|207
8BHF|1|A3|G|208
8BHF|1|A3|A|209
8BHF|1|A3|U|210
8BHF|1|A3|G|211

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain J3

40S ribosomal protein S8