IL_8BHF_196

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A3|C|223
8BHF|1|A3|A|224
8BHF|1|A3|G|225
8BHF|1|A3|U|287
8BHF|1|A3|G|288
*
8BHF|1|A3|C|295
8BHF|1|A3|U|296
8BHF|1|A3|A|297
8BHF|1|A3|G|298

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain F3

40S ribosomal protein S4

Chain H3

40S ribosomal protein S6

Chain J3

40S ribosomal protein S8

Chain M3

40S ribosomal protein S11