IL_8BHF_209
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CGAGGAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_209 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.1894
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8BHF|1|A3|G|563
8BHF|1|A3|A|564
8BHF|1|A3|G|565
*
8BHF|1|A3|C|585
8BHF|1|A3|G|586
8BHF|1|A3|A|587
8BHF|1|A3|G|588
8BHF|1|A3|G|589
8BHF|1|A3|A|590
8BHF|1|A3|U|591
8BHF|1|A3|C|592
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain K3
- Ribosomal protein S9 (Predicted)
- Chain f3
- Ubiquitin-like domain-containing protein
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