IL_8BHF_217

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_217 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2517

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8BHF|1|A3|G|692
8BHF|1|A3|A|693
8BHF|1|A3|G|694
8BHF|1|A3|C|695
*
8BHF|1|A3|G|731
8BHF|1|A3|U|732
8BHF|1|A3|C|733
8BHF|1|A3|C|734

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain I3

40S ribosomal protein S7

Chain X3

Ribosomal protein S15a