IL_8BHF_224

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_224 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.102

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8BHF|1|A3|A|922
8BHF|1|A3|G|923
*
8BHF|1|A3|C|1019
8BHF|1|A3|A|1020
8BHF|1|A3|U|1021
8BHF|1|A3|U|1022

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain O3

ribosomal protein uS15

Chain X3

Ribosomal protein S15a

Chain c3

40S ribosomal protein S27