IL_8BHF_225

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8BHF|1|A3|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_225 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.2628

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8BHF|1|A3|G|925
8BHF|1|A3|A|926
8BHF|1|A3|C|927
*
8BHF|1|A3|G|1014
8BHF|1|A3|U|1015
8BHF|1|A3|U|1016
8BHF|1|A3|U|1017

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain O3

ribosomal protein uS15

Chain c3

40S ribosomal protein S27