IL_8BHF_231
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_231 not in the Motif Atlas
- Geometric match to IL_5J7L_037
- Geometric discrepancy: 0.0857
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8BHF|1|A3|C|1047
8BHF|1|A3|G|1048
8BHF|1|A3|A|1049
8BHF|1|A3|A|1050
8BHF|1|A3|G|1051
*
8BHF|1|A3|C|1067
8BHF|1|A3|G|1068
8BHF|1|A3|U|1069
8BHF|1|A3|A|1070
8BHF|1|A3|G|1071
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain P3
- Ribosomal protein S14
- Chain b3
- 40S ribosomal protein S26
- Chain j3
- 60S ribosomal protein L8
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