IL_8BHF_232
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8BHF|1|A3|U|1155, 8BHF|1|A3|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_232 not in the Motif Atlas
- Homologous match to IL_8P9A_425
- Geometric discrepancy: 0.1408
- The information below is about IL_8P9A_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BHF|1|A3|C|1091
8BHF|1|A3|G|1092
8BHF|1|A3|A|1093
*
8BHF|1|A3|U|1152
8BHF|1|A3|C|1153
8BHF|1|A3|U|1154
8BHF|1|A3|U|1155
8BHF|1|A3|U|1156
8BHF|1|A3|G|1157
8BHF|1|A3|G|1158
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain D3
- 40S ribosomal protein S2
- Chain M3
- 40S ribosomal protein S11
- Chain O3
- ribosomal protein uS15
- Chain X3
- Ribosomal protein S15a
- Chain Y3
- Ribosomal protein S23
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