IL_8BHF_240
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_240 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.0985
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8BHF|1|A3|C|1230
8BHF|1|A3|C|1231
8BHF|1|A3|U|1232
*
8BHF|1|A3|G|1526
8BHF|1|A3|C|1527
8BHF|1|A3|G|1528
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain 21
- Transfer RNA; tRNA
- Chain Q3
- 40S ribosomal protein S15
- Chain R3
- Ribosomal protein S16
- Chain T3
- 40S ribosomal protein S18
- Chain U3
- 40S ribosomal protein S19
- Chain V3
- Ribosomal protein S20
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