IL_8BHF_242
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_242 not in the Motif Atlas
- Geometric match to IL_6IA2_002
- Geometric discrepancy: 0.109
- The information below is about IL_6IA2_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8BHF|1|A3|G|1270
8BHF|1|A3|C|1271
8BHF|1|A3|C|1272
*
8BHF|1|A3|G|1510
8BHF|1|A3|U|1511
8BHF|1|A3|C|1512
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain L3
- Plectin/S10 N-terminal domain-containing protein
- Chain Q3
- 40S ribosomal protein S15
- Chain e3
- 40S ribosomal protein S29
- Chain g3
- Ubiquitin-40S ribosomal protein S27a
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