IL_8BHF_243

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACAGGA*UUC

Length

10 nucleotides

Bulged bases

8BHF|1|A3|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A3|G|1281
8BHF|1|A3|A|1282
8BHF|1|A3|C|1283
8BHF|1|A3|A|1284
8BHF|1|A3|G|1285
8BHF|1|A3|G|1286
8BHF|1|A3|A|1287
*
8BHF|1|A3|U|1314
8BHF|1|A3|U|1315
8BHF|1|A3|C|1316

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain L3

Plectin/S10 N-terminal domain-containing protein

Chain N3

40S ribosomal protein S12

Chain g3

Ubiquitin-40S ribosomal protein S27a