IL_8BHF_258

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_258 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0786

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8BHF|1|A3|G|1604
8BHF|1|A3|G|1605
8BHF|1|A3|G|1606
8BHF|1|A3|A|1607
8BHF|1|A3|U|1608
8BHF|1|A3|C|1609
8BHF|1|A3|G|1610
*
8BHF|1|A3|C|1629
8BHF|1|A3|A|1630
8BHF|1|A3|U|1631
8BHF|1|A3|G|1632
8BHF|1|A3|A|1633
8BHF|1|A3|A|1634
8BHF|1|A3|C|1635

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain G3

Ribosomal protein S5

Chain T3

40S ribosomal protein S18

Chain U3

40S ribosomal protein S19