IL_8BHF_294
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_294 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3164
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BHF|1|A3|C|1098
8BHF|1|A3|G|1099
8BHF|1|A3|A|1100
8BHF|1|A3|U|1101
8BHF|1|A3|G|1102
8BHF|1|A3|C|1103
*
8BHF|1|A3|G|1129
8BHF|1|A3|G|1130
8BHF|1|A3|G|1131
8BHF|1|A3|C|1132
8BHF|1|A3|A|1133
8BHF|1|A3|G|1134
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain B3
- 40S_SA_C domain-containing protein
- Chain C3
- 40S ribosomal protein S3a
- Chain O3
- ribosomal protein uS15
- Chain S3
- 40S ribosomal protein S17
- Chain b3
- 40S ribosomal protein S26
- Chain c3
- 40S ribosomal protein S27
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