IL_8BHF_297
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 8BHF|1|A3|U|1585, 8BHF|1|A3|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A3|G|1541
8BHF|1|A3|C|1542
8BHF|1|A3|U|1543
8BHF|1|A3|C|1544
8BHF|1|A3|A|1545
8BHF|1|A3|G|1546
8BHF|1|A3|C|1547
8BHF|1|A3|G|1548
8BHF|1|A3|U|1549
8BHF|1|A3|G|1550
*
8BHF|1|A3|C|1582
8BHF|1|A3|C|1583
8BHF|1|A3|G|1584
8BHF|1|A3|U|1585
8BHF|1|A3|U|1586
8BHF|1|A3|G|1587
8BHF|1|A3|A|1588
8BHF|1|A3|A|1589
8BHF|1|A3|C|1590
8BHF|1|A3|C|1591
8BHF|1|A3|C|1592
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain E3
- Ribosomal protein S3
- Chain G3
- Ribosomal protein S5
- Chain R3
- Ribosomal protein S16
- Chain U3
- 40S ribosomal protein S19
- Chain V3
- Ribosomal protein S20
- Chain a3
- 40S ribosomal protein S25
- Chain e3
- 40S ribosomal protein S29
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