IL_8BHF_300
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_300 not in the Motif Atlas
- Geometric match to IL_8GLP_012
- Geometric discrepancy: 0.306
- The information below is about IL_8GLP_012
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.10
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 43
Unit IDs
8BHF|1|A3|C|1751
8BHF|1|A3|C|1752
*
8BHF|1|A3|G|1780
8BHF|1|A3|A|1781
8BHF|1|A3|G|1782
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain H3
- 40S ribosomal protein S6
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