IL_8BHJ_080

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GUUG*UGC

Length

7 nucleotides

Bulged bases

8BHJ|1|0|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_080 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2482

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8BHJ|1|0|G|2201
8BHJ|1|0|U|2202
8BHJ|1|0|U|2203
8BHJ|1|0|G|2204
*
8BHJ|1|0|U|2220
8BHJ|1|0|G|2221
8BHJ|1|0|C|2222

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain F

50S ribosomal protein L9

Chain U

50S ribosomal protein L28