IL_8BHJ_123

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8BHJ|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_123 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.313

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8BHJ|1|2|G|147
8BHJ|1|2|G|148
8BHJ|1|2|A|149
8BHJ|1|2|U|150
8BHJ|1|2|A|151
8BHJ|1|2|A|152
8BHJ|1|2|C|153
*
8BHJ|1|2|G|168
8BHJ|1|2|C|169
8BHJ|1|2|U|170
8BHJ|1|2|A|171
8BHJ|1|2|A|172
8BHJ|1|2|U|173
8BHJ|1|2|A|174
8BHJ|1|2|C|175

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20