3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
ACAAU*AU
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHJ_130 not in the Motif Atlas
Geometric match to IL_5J7L_018
Geometric discrepancy: 0.1501
The information below is about IL_5J7L_018
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

8BHJ|1|2|A|371
8BHJ|1|2|C|372
8BHJ|1|2|A|373
8BHJ|1|2|A|374
8BHJ|1|2|U|375
*
8BHJ|1|2|A|389
8BHJ|1|2|U|390

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain t
30S ribosomal protein S16

Coloring options:


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