3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
CGUAAAG*CG
Length
9 nucleotides
Bulged bases
8BHJ|1|2|A|572
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHJ_139 not in the Motif Atlas
Homologous match to IL_4LFB_022
Geometric discrepancy: 0.1682
The information below is about IL_4LFB_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.6
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
4

Unit IDs

8BHJ|1|2|C|569
8BHJ|1|2|G|570
8BHJ|1|2|U|571
8BHJ|1|2|A|572
8BHJ|1|2|A|573
8BHJ|1|2|A|574
8BHJ|1|2|G|575
*
8BHJ|1|2|C|880
8BHJ|1|2|G|881

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain p
30S ribosomal protein S12
Chain u
30S ribosomal protein S17

Coloring options:


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