IL_8BHJ_152
3D structure
- PDB id
- 8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.81 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHJ_152 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.1287
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8BHJ|1|2|G|887
8BHJ|1|2|G|888
8BHJ|1|2|A|889
8BHJ|1|2|G|890
8BHJ|1|2|U|891
8BHJ|1|2|A|892
8BHJ|1|2|C|893
8BHJ|1|2|G|894
*
8BHJ|1|2|U|905
8BHJ|1|2|A|906
8BHJ|1|2|A|907
8BHJ|1|2|A|908
8BHJ|1|2|A|909
8BHJ|1|2|C|910
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain p
- 30S ribosomal protein S12
Coloring options: