IL_8BHJ_166

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_166 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.3032

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

8BHJ|1|2|G|1124
8BHJ|1|2|U|1125
8BHJ|1|2|U|1126
8BHJ|1|2|G|1127
8BHJ|1|2|C|1128
*
8BHJ|1|2|G|1144
8BHJ|1|2|A|1145
8BHJ|1|2|A|1146
8BHJ|1|2|C|1147
8BHJ|1|2|U|1148
8BHJ|1|2|C|1149

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain m

30S ribosomal protein S9

Chain n

30S ribosomal protein S10