IL_8BHJ_169

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

8BHJ|1|2|A|1257, 8BHJ|1|2|A|1280, 8BHJ|1|2|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_169 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2657

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8BHJ|1|2|G|1255
8BHJ|1|2|A|1256
8BHJ|1|2|A|1257
8BHJ|1|2|G|1258
*
8BHJ|1|2|C|1277
8BHJ|1|2|G|1278
8BHJ|1|2|G|1279
8BHJ|1|2|A|1280
8BHJ|1|2|C|1281
8BHJ|1|2|C|1282

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain g

30S ribosomal protein S3

Chain n

30S ribosomal protein S10

Chain r

30S ribosomal protein S14