3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
GCACUG*CAAAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHJ_186 not in the Motif Atlas
Geometric match to IL_4V9F_035
Geometric discrepancy: 0.2499
The information below is about IL_4V9F_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

8BHJ|1|0|G|864
8BHJ|1|0|C|865
8BHJ|1|0|A|866
8BHJ|1|0|C|867
8BHJ|1|0|U|868
8BHJ|1|0|G|869
*
8BHJ|1|0|C|908
8BHJ|1|0|A|909
8BHJ|1|0|A|910
8BHJ|1|0|A|911
8BHJ|1|0|C|912

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 1
5S ribosomal RNA; 5S rRNA
Chain J
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1759 s