IL_8BHJ_190

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_190 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1522

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BHJ|1|0|U|1851
8BHJ|1|0|U|1852
8BHJ|1|0|A|1853
8BHJ|1|0|A|1854
8BHJ|1|0|U|1855
8BHJ|1|0|U|1856
8BHJ|1|0|G|1857
8BHJ|1|0|A|1858
8BHJ|1|0|U|1859
8BHJ|1|0|G|1860
*
8BHJ|1|0|U|1882
8BHJ|1|0|U|1883
8BHJ|1|0|G|1884
8BHJ|1|0|A|1885
8BHJ|1|0|U|1886
8BHJ|1|0|C|1887
8BHJ|1|0|G|1888
8BHJ|1|0|A|1889
8BHJ|1|0|A|1890
8BHJ|1|0|G|1891

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains