IL_8BHL_040

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHL_040 not in the Motif Atlas

Geometric match to IL_4KQ0_002

Geometric discrepancy: 0.1695

The information below is about IL_4KQ0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8BHL|1|0|G|1041
8BHL|1|0|G|1042
8BHL|1|0|C|1043
*
8BHL|1|0|G|1112
8BHL|1|0|U|1113
8BHL|1|0|C|1114

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain S

50S ribosomal protein L25