IL_8BHL_101

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

8BHL|1|0|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHL_101 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1033

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8BHL|1|0|G|2737
8BHL|1|0|A|2738
8BHL|1|0|U|2739
8BHL|1|0|A|2740
8BHL|1|0|A|2741
8BHL|1|0|G|2742
*
8BHL|1|0|C|2762
8BHL|1|0|G|2763
8BHL|1|0|A|2764
8BHL|1|0|A|2765
8BHL|1|0|A|2766
8BHL|1|0|C|2767

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13

Chain e

50S ribosomal protein L36