3D structure

PDB id
8BHL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.21 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
8BHL|1|2|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHL_122 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.1592
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

8BHL|1|2|G|147
8BHL|1|2|G|148
8BHL|1|2|A|149
8BHL|1|2|U|150
8BHL|1|2|A|151
8BHL|1|2|A|152
8BHL|1|2|C|153
*
8BHL|1|2|G|168
8BHL|1|2|C|169
8BHL|1|2|U|170
8BHL|1|2|A|171
8BHL|1|2|A|172
8BHL|1|2|U|173
8BHL|1|2|A|174
8BHL|1|2|C|175

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain x
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1109 s