IL_8BHN_006

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_006 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.1138

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8BHN|1|0|G|188
8BHN|1|0|G|189
8BHN|1|0|A|190
8BHN|1|0|A|191
8BHN|1|0|C|192
8BHN|1|0|U|193
8BHN|1|0|G|194
*
8BHN|1|0|C|201
8BHN|1|0|U|202
8BHN|1|0|A|203
8BHN|1|0|A|204
8BHN|1|0|G|205
8BHN|1|0|U|206
8BHN|1|0|A|207
8BHN|1|0|C|208

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28