IL_8BHN_021

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8BHN|1|0|G|776, 8BHN|1|0|A|788, 8BHN|1|0|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_021 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0657

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8BHN|1|0|G|775
8BHN|1|0|G|776
8BHN|1|0|G|777
*
8BHN|1|0|C|787
8BHN|1|0|A|788
8BHN|1|0|A|789
8BHN|1|0|U|790
8BHN|1|0|C|791

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain P

50S ribosomal protein L22

Chain c

50S ribosomal protein L34