IL_8BHN_030

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGGG*CUUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_030 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2508

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8BHN|1|0|G|880
8BHN|1|0|G|881
8BHN|1|0|G|882
8BHN|1|0|G|883
*
8BHN|1|0|C|893
8BHN|1|0|U|894
8BHN|1|0|U|895
8BHN|1|0|A|896
8BHN|1|0|C|897

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 5

Transfer RNA; tRNA