IL_8BHN_043

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

8BHN|1|0|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_043 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1715

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8BHN|1|0|C|1319
8BHN|1|0|C|1320
8BHN|1|0|A|1321
8BHN|1|0|A|1322
8BHN|1|0|C|1323
*
8BHN|1|0|G|1331
8BHN|1|0|G|1332
8BHN|1|0|G|1333

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain P

50S ribosomal protein L22