IL_8BHN_087

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_087 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.2226

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

8BHN|1|0|A|2459
8BHN|1|0|U|2460
8BHN|1|0|A|2461
*
8BHN|1|0|U|2489
8BHN|1|0|G|2490
8BHN|1|0|U|2491
8BHN|1|0|U|2492
8BHN|1|0|U|2493

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain J

50S ribosomal protein L16