IL_8BHN_090

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8BHN|1|0|G|2576, 8BHN|1|0|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_090 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1337

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8BHN|1|0|C|2510
8BHN|1|0|U|2511
8BHN|1|0|C|2512
*
8BHN|1|0|G|2574
8BHN|1|0|C|2575
8BHN|1|0|G|2576
8BHN|1|0|A|2577
8BHN|1|0|G|2578

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain a

50S ribosomal protein L32