IL_8BHN_098

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8BHN|1|0|U|2689, 8BHN|1|0|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_098 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1301

The information below is about IL_4WF9_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8BHN|1|0|U|2687
8BHN|1|0|G|2688
8BHN|1|0|U|2689
8BHN|1|0|U|2690
8BHN|1|0|C|2691
*
8BHN|1|0|G|2718
8BHN|1|0|G|2719
8BHN|1|0|U|2720
8BHN|1|0|A|2721
8BHN|1|0|G|2722

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19