IL_8BHN_122

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8BHN|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_122 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2511

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8BHN|1|2|G|147
8BHN|1|2|G|148
8BHN|1|2|A|149
8BHN|1|2|U|150
8BHN|1|2|A|151
8BHN|1|2|A|152
8BHN|1|2|C|153
*
8BHN|1|2|G|168
8BHN|1|2|C|169
8BHN|1|2|U|170
8BHN|1|2|A|171
8BHN|1|2|A|172
8BHN|1|2|U|173
8BHN|1|2|A|174
8BHN|1|2|C|175

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20