IL_8BHN_133

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_133 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1607

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8BHN|1|2|G|450
8BHN|1|2|A|451
8BHN|1|2|A|452
8BHN|1|2|G|453
8BHN|1|2|G|454
8BHN|1|2|G|455
*
8BHN|1|2|C|477
8BHN|1|2|A|478
8BHN|1|2|U|479
8BHN|1|2|U|480
8BHN|1|2|G|481
8BHN|1|2|A|482
8BHN|1|2|C|483

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain t

30S ribosomal protein S16